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  5. Aop_g14110

Aop_g14110


Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14110

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
Ehy_g31405 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.03 OrthoFinder output from all 47 species
LOC_Os06g04020.1 HIS1-3, LOC_Os06g04020 linker histone (H1) 0.02 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Len_g20296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_5951905g0010 HIS1-3 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Spa_g31027 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 43 110
No external refs found!