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  5. Lfl_g10345

Lfl_g10345


Description : endomembrane trafficking ATG6-stability regulator protein *(TRAF1) & original description: none


Gene families : OG0003009 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003009_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10345

Target Alias Description ECC score Gene Family Method Actions
AT1G04300 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g067633 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Aev_g15167 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Aev_g48943 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Als_g21634 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g014184 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Ceric.26G060700.1 Ceric.26G060700 endomembrane trafficking ATG6-stability regulator... 0.05 OrthoFinder output from all 47 species
Dac_g15546 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Dcu_g03193 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
GSVIVT01018133001 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.05 OrthoFinder output from all 47 species
LOC_Os05g43280.1 LOC_Os05g43280 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
LOC_Os12g40520.1 LOC_Os12g40520 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
Mp8g14880.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 OrthoFinder output from all 47 species
Nbi_g17444 No alias endomembrane trafficking ATG6-stability regulator... 0.02 OrthoFinder output from all 47 species
Ore_g36306 No alias endomembrane trafficking ATG6-stability regulator... 0.04 OrthoFinder output from all 47 species
Sam_g08395 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Tin_g12910 No alias endomembrane trafficking ATG6-stability regulator... 0.03 OrthoFinder output from all 47 species
Zm00001e003140_P001 Zm00001e003140 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 OrthoFinder output from all 47 species
Zm00001e019653_P002 Zm00001e019653 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 OrthoFinder output from all 47 species
Zm00001e027387_P004 Zm00001e027387 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 OrthoFinder output from all 47 species
Zm00001e032087_P004 Zm00001e032087 TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 78 195
No external refs found!