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  5. Aop_g18839

Aop_g18839


Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g18839

Target Alias Description ECC score Gene Family Method Actions
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.04 OrthoFinder output from all 47 species
Adi_g098070 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19801 WLIM1 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene62649.t1 WLIM1, Aspi01Gene62649 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g04896 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10082 WLIM1 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g24841 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g13344 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.03 OrthoFinder output from all 47 species
GSVIVT01009338001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
GSVIVT01026849001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.01 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25515 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04943 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57701 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g088320.2.1 WLIM1, Solyc12g088320 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Spa_g27853 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 53 108
IPR001781 Znf_LIM 151 206
No external refs found!