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  5. Aop_g19112

Aop_g19112 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g19112

Target Alias Description ECC score Gene Family Method Actions
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.04 OrthoFinder output from all 47 species
Ala_g04849 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009656 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=186-1232 0.03 OrthoFinder output from all 47 species
Dde_g26717 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
LOC_Os04g42020.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os10g41100.1 ATCOL5, COL5,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Len_g17115 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05304 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08431 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38065 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04847 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34586 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002977 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=1-1206 0.03 OrthoFinder output from all 47 species
Solyc12g096500.2.1 ATCOL4, COL4,... transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 3 44
IPR000315 Znf_B-box 45 90
IPR010402 CCT_domain 310 352
No external refs found!