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  5. Aop_g19410

Aop_g19410


Description : not classified & original description: none


Gene families : OG0000293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g19410
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AT1G14880 PCR1 PLANT CADMIUM RESISTANCE 1 0.01 OrthoFinder output from all 47 species
AT1G52200 No alias PLAC8 family protein 0.01 OrthoFinder output from all 47 species
Aspi01Gene15484.t1 Aspi01Gene15484 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0034.g025420 No alias not classified & original description: CDS=73-783 0.02 OrthoFinder output from all 47 species
Dde_g16541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011687001 PCR2 Cell number regulator 2 OS=Zea mays 0.02 OrthoFinder output from all 47 species
GSVIVT01031753001 No alias Cell number regulator 1 OS=Zea mays 0.02 OrthoFinder output from all 47 species
Gb_37165 No alias Cell number regulator 9 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
LOC_Os02g36940.1 LOC_Os02g36940 Cell number regulator 2 OS=Zea mays... 0.01 OrthoFinder output from all 47 species
Len_g03169 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g49051 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_79837g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp4g22340.1 No alias Protein PLANT CADMIUM RESISTANCE 7 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g19822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g005470.3.1 PCR2, Solyc01g005470 Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Solyc03g119660.2.1 Solyc03g119660 Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g120600.4.1 Solyc03g120600 Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc04g007900.3.1 PCR2, Solyc04g007900 Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g066590.4.1 Solyc06g066590 Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e011704_P001 PCR2, Zm00001e011704 Cell number regulator 10 OS=Zea mays... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006461 PLAC_motif_containing 41 155
No external refs found!