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  5. Aop_g20387

Aop_g20387 (UBQ6)


Aliases : UBQ6

Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g20387
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.03 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.04 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.02 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g63594 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g64104 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.21G057000.1 UBQ6, Ceric.21G057000 component *(eS31) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g26143 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g38726 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os01g22490.1 UBQ6, LOC_Os01g22490 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g06770.1 UBQ6, LOC_Os05g06770 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os09g39500.1 LOC_Os09g39500 component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Lfl_g15041 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Lfl_g15980 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pir_g08617 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.01 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.03 OrthoFinder output from all 47 species
Pp3c24_430V3.1 Pp3c24_430 ubiquitin extension protein 1 0.04 OrthoFinder output from all 47 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.03 OrthoFinder output from all 47 species
Ppi_g04808 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g20546 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g44136 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Smo111605 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc01g068045.1.1 UBQ6, Solyc01g068045 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc03g082570.4.1 Solyc03g082570 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc12g098940.2.1 UBQ6, Solyc12g098940 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g02055 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g29603 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g29979 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e009474_P001 Zm00001e009474 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 101 145
IPR000626 Ubiquitin-like_dom 3 71
No external refs found!