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  5. Aop_g23486

Aop_g23486


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g23486

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.03 OrthoFinder output from all 47 species
Adi_g008519 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g059409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36200 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37112 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34758.t1 Aspi01Gene34758 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11093 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13534 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23385 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29994 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.03 OrthoFinder output from all 47 species
Ceric.04G103900.1 Ceric.04G103900 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.03 OrthoFinder output from all 47 species
Ceric.07G091600.1 Ceric.07G091600 not classified & original description: pacid=50627346... 0.03 OrthoFinder output from all 47 species
Ceric.24G044900.1 CRR2, Ceric.24G044900 not classified & original description: pacid=50629668... 0.03 OrthoFinder output from all 47 species
Ceric.39G007300.1 Ceric.39G007300 not classified & original description: pacid=50582343... 0.03 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
Dac_g27755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07737 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08279 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03975 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19384 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g35436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52150 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012201001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
GSVIVT01017209001 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Len_g05347 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05460 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22995 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23994 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g26583 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g43451 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44151 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06713 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08420 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32916 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10472 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19745 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27636 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04638 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49012 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004580 No alias not classified & original description: CDS=1-2331 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013917 No alias not classified & original description: CDS=1-2493 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018249 No alias ssDNA-binding protein *(OSB) & original description: CDS=114-2492 0.05 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
Spa_g01950 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g02644 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g08057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12946 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16047 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20454 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g22006 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29428 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g39089 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46182 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49488 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50618 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53361 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54465 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g54482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015727_P001 Zm00001e015727 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 1041 1103
IPR002885 Pentatricopeptide_repeat 900 923
IPR002885 Pentatricopeptide_repeat 295 320
IPR002885 Pentatricopeptide_repeat 626 655
IPR002885 Pentatricopeptide_repeat 395 417
IPR002885 Pentatricopeptide_repeat 698 720
IPR002885 Pentatricopeptide_repeat 121 149
IPR002885 Pentatricopeptide_repeat 596 618
IPR002885 Pentatricopeptide_repeat 999 1021
IPR002885 Pentatricopeptide_repeat 828 857
IPR002885 Pentatricopeptide_repeat 496 517
IPR002885 Pentatricopeptide_repeat 219 265
IPR002885 Pentatricopeptide_repeat 724 770
IPR002885 Pentatricopeptide_repeat 522 568
IPR002885 Pentatricopeptide_repeat 421 467
IPR002885 Pentatricopeptide_repeat 324 366
IPR002885 Pentatricopeptide_repeat 925 972
IPR032867 DYW_dom 1137 1228
No external refs found!