1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g26015

Aop_g26015


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g26015
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AT1G16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G74600 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g37733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34109.t1 Aspi01Gene34109 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65846.t1 OSB3, Aspi01Gene65846 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Cba_g07198 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04371 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g09800.1 OTP82, LOC_Os02g09800 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Len_g33285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08923 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04505 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22615 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002764 No alias not classified & original description: CDS=1-2754 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1878 0.03 OrthoFinder output from all 47 species
Sam_g08102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g094480.4.1 Solyc02g094480 RNA editing factor (MEF14) 0.03 OrthoFinder output from all 47 species
Spa_g43840 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0017062 respiratory chain complex III assembly IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP HCCA
BP GO:0034551 mitochondrial respiratory chain complex III assembly IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 700 760
IPR002885 Pentatricopeptide_repeat 377 427
IPR002885 Pentatricopeptide_repeat 451 474
IPR002885 Pentatricopeptide_repeat 250 274
IPR002885 Pentatricopeptide_repeat 353 374
IPR002885 Pentatricopeptide_repeat 77 106
IPR002885 Pentatricopeptide_repeat 151 175
IPR002885 Pentatricopeptide_repeat 655 680
IPR002885 Pentatricopeptide_repeat 49 69
IPR002885 Pentatricopeptide_repeat 581 629
IPR002885 Pentatricopeptide_repeat 280 324
IPR002885 Pentatricopeptide_repeat 176 223
IPR002885 Pentatricopeptide_repeat 479 526
No external refs found!