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  5. Aop_g26785

Aop_g26785


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g26785

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00140p00035900 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g20976 QRT1 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g41068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11060 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22635 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene33566.t1 Aspi01Gene33566 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008131 No alias pectin methylesterase & original description: CDS=1-870 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.03 OrthoFinder output from all 47 species
Azfi_s0103.g044651 No alias pectin methylesterase & original description: CDS=1-1083 0.02 OrthoFinder output from all 47 species
Azfi_s0516.g074982 No alias not classified & original description: CDS=1-498 0.03 OrthoFinder output from all 47 species
Azfi_s0648.g080905 No alias pectin methylesterase & original description: CDS=1-489 0.04 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G071300.1 Ceric.10G071300 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23946 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42904 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02245 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05158 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09538 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12469 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12470 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13224 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000525001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
Gb_01459 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_17798 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Len_g56779 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_112715g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_181657g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_62865g0010 No alias pectin methylesterase 0.06 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Msp_g08120 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g08672 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10586 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39582 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38524 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g39408 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20523 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g31349 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c16_6660V3.1 Pp3c16_6660 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ppi_g03753 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950 No alias pectin methylesterase & original description: CDS=716-1846 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010557 No alias pectin methylesterase & original description: CDS=267-1394 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015086 No alias pectin methylesterase & original description: CDS=460-1611 0.02 OrthoFinder output from all 47 species
Solyc01g109740.3.1 ATPE11, PE11,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Solyc09g091730.4.1 Solyc09g091730 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 82 367
No external refs found!