1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g11310

Lfl_g11310


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g11310

Target Alias Description ECC score Gene Family Method Actions
AT3G02340 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G01980 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G64920 CIP8 COP1-interacting protein 8 0.02 OrthoFinder output from all 47 species
Adi_g003792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g021049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085324 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Adi_g102739 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g03741 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05181 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene11235.t1 Aspi01Gene11235 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026224 No alias not classified & original description: CDS=1-687 0.04 OrthoFinder output from all 47 species
Azfi_s0125.g048560 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.02G061800.1 Ceric.02G061800 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.14G083100.1 Ceric.14G083100 not classified & original description: pacid=50633279... 0.03 OrthoFinder output from all 47 species
Ceric.16G066200.1 Ceric.16G066200 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g05277 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037379001 RHC1A Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_06048 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_30381 RHC1A Probable E3 ubiquitin-protein ligase RHC2A... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01200.1 LOC_Os06g01200 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
LOC_Os08g38060.1 LOC_Os08g38060 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g11022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g48692 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428335g0020 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Ore_g03871 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g41838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12284 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g00999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000146 No alias not classified & original description: CDS=228-1322 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020256 No alias not classified & original description: CDS=1-1698 0.02 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 236 278
IPR039525 RNF126-like_zinc-ribbon 9 39
No external refs found!