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  5. Aop_g28421

Aop_g28421 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g28421
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17854 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05294 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25448.t1 Aspi01Gene25448 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007676 No alias not classified & original description: CDS=1-2364 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033749 No alias not classified & original description: CDS=1-3141 0.03 OrthoFinder output from all 47 species
Cba_g06588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20862 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29637 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g34641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34770 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35189 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G038000.1 Ceric.04G038000 not classified & original description: pacid=50632532... 0.04 OrthoFinder output from all 47 species
Ceric.13G057100.1 Ceric.13G057100 not classified & original description: pacid=50635531... 0.03 OrthoFinder output from all 47 species
Ceric.28G015100.1 Ceric.28G015100 not classified & original description: pacid=50570923... 0.04 OrthoFinder output from all 47 species
Dac_g03363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08760 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17110 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g37178 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g44550 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45945 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07891 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38992 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
LOC_Os01g60250.1 LOC_Os01g60250 Pentatricopeptide repeat-containing protein At3g14730... 0.06 OrthoFinder output from all 47 species
LOC_Os12g06070.1 LOC_Os12g06070 Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
Len_g03400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03845 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g04830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08837 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17772 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g47762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_111990g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.04 OrthoFinder output from all 47 species
Msp_g26428 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48107 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03074 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g03413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11374 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17052 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18003 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g19712 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g34957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g40819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30607 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03913 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g34591 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007796 No alias not classified & original description: CDS=1-2022 0.02 OrthoFinder output from all 47 species
Sam_g03326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Spa_g04485 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26548 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26827 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17410 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 86 132
IPR002885 Pentatricopeptide_repeat 391 437
IPR002885 Pentatricopeptide_repeat 186 233
IPR002885 Pentatricopeptide_repeat 289 335
IPR002885 Pentatricopeptide_repeat 567 585
IPR002885 Pentatricopeptide_repeat 59 81
IPR002885 Pentatricopeptide_repeat 363 385
IPR002885 Pentatricopeptide_repeat 260 285
IPR002885 Pentatricopeptide_repeat 495 524
No external refs found!