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  5. Aop_g29950

Aop_g29950


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g29950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Ala_g22420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02865 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21628 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33592 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G090300.1 Ceric.12G090300 not classified & original description: pacid=50600499... 0.04 OrthoFinder output from all 47 species
Ceric.19G000700.1 VAC1, ECB2,... not classified & original description: pacid=50576122... 0.04 OrthoFinder output from all 47 species
Ceric.21G053500.1 Ceric.21G053500 not classified & original description: pacid=50604142... 0.05 OrthoFinder output from all 47 species
Dac_g09065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g13534 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g16347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25258 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32635 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g42987 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g45699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os11g29360.1 OTP82, LOC_Os11g29360 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Len_g17341 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g53877 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10429069g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g27905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17805 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g46045 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.04 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 46 104
No external refs found!