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  5. Lfl_g12392

Lfl_g12392


Description : regulatory protein (CIB) of blue light perception & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12392
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT4G28790 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 OrthoFinder output from all 47 species
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G48560 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g012121 HEC2 bHLH-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g042065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056779 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075291 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10321 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26070 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10281 HEC3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50421 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aop_g07421 LRL3 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21701 No alias regulatory protein (CIB) of blue light perception &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene05129.t1 RSL2, Aspi01Gene05129 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32833.t1 RSL2, Aspi01Gene32833 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35112.t2 SPT, Aspi01Gene35112 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54818.t2 RSL2, Aspi01Gene54818 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0482.g073137 LRL3 bHLH-type transcription factor & original description: CDS=1-1173 0.03 OrthoFinder output from all 47 species
Cba_g57539 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G038900.1 LRL3, Ceric.04G038900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.07G026100.1 LRL3, Ceric.07G026100 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.08G020500.1 RSL2, Ceric.08G020500 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z049100.1 HEC1, Ceric.1Z049100 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z049600.1 Ceric.1Z049600 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.21G084700.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.22G021400.1 CIB5, Ceric.22G021400 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g09865 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Dac_g23770 No alias regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Dcu_g06439 CIB1 regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Dde_g25483 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05767 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ehy_g09150 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007389001 No alias External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
GSVIVT01023585001 LRL1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Gb_07156 PIF3, POC1, PAP3 transcription factor (bHLH). PIF red/far-red light... 0.03 OrthoFinder output from all 47 species
Gb_20300 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Gb_30839 RHD6 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_36369 BPEp, ZCW32, BPE, BPEub transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Gb_39758 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g58830.1 LOC_Os03g58830 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g41229.1 LOC_Os04g41229 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g30090.1 RHD6, LOC_Os06g30090 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os09g28210.1 HEC1, LOC_Os09g28210 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os11g25560.1 LOC_Os11g25560 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
LOC_Os12g32400.1 LOC_Os12g32400 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Len_g47855 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08868 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Lfl_g21331 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
MA_158362g0010 CIB5 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
MA_78485g0010 RSL4 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_83500g0010 HEC1 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Mp3g23300.1 HEC3 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Mp6g21470.1 RSL2 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g09470 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03697 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19103 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ore_g44492 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g06488 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g10238 HEC1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08374 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33726 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60624 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Smo24892 LRL1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Solyc02g062690.3.1 BEE2, Solyc02g062690 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc03g034000.3.1 BEE2, Solyc03g034000 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc03g119390.4.1 BEE3, Solyc03g119390 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc06g072520.2.1 Solyc06g072520 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc09g065820.4.1 UNE12, Solyc09g065820 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Spa_g06107 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33531 RHD6 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37930 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Spa_g50491 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51777 No alias regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Zm00001e011084_P002 Zm00001e011084 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e018003_P001 RSL2, Zm00001e018003 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e037598_P001 Zm00001e037598 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 355 402
No external refs found!