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  5. Lfl_g12448

Lfl_g12448


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12448

Target Alias Description ECC score Gene Family Method Actions
Ala_g14569 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g30469 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25532 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25552 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g26678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013978 CRR22 not classified & original description: CDS=1-2136 0.01 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.01 OrthoFinder output from all 47 species
Azfi_s0349.g066523 EMB2758 not classified & original description: CDS=141-2294 0.01 OrthoFinder output from all 47 species
Ceric.05G087100.1 Ceric.05G087100 not classified & original description: pacid=50579181... 0.03 OrthoFinder output from all 47 species
Dac_g40077 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19078 EMB2261 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g43186 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12385 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g41530.1 LOC_Os03g41530 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Len_g19020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g50872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g45870 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04775 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g35668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 190 282
IPR046848 E_motif 92 154
IPR046849 Eplus_motif 159 186
IPR002885 Pentatricopeptide_repeat 11 38
IPR002885 Pentatricopeptide_repeat 50 74
No external refs found!