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  5. Lfl_g12534

Lfl_g12534


Description : not classified & original description: none


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12534

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00122030 evm_27.TU.AmTr_v1... Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g033938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107387 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18903 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g22455 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g36780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.03 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.04 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g15571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05934 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015601001 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_10432878g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_24634g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.04 OrthoFinder output from all 47 species
Msp_g47722 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Nbi_g24466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29810 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g15178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016184 No alias not classified & original description: CDS=189-5282 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.04 OrthoFinder output from all 47 species
Sam_g11589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo173767 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Spa_g37203 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 446 553
IPR002083 MATH/TRAF_dom 105 224
IPR002083 MATH/TRAF_dom 597 704
No external refs found!