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  5. Lfl_g12805

Lfl_g12805 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : component *(NRPB2) of RNA polymerase II complex & original description: none


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12805
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00181410 EMB1989, RPB2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 OrthoFinder output from all 47 species
Adi_g061129 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Adi_g098465 EMB1989, RPB2, NRPB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01571 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Aev_g39406 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.04 OrthoFinder output from all 47 species
Ala_g05404 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.05 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Cba_g01330 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g09431 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Ehy_g24202 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01020543001 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_05262 NRPC2 subunit 2 of Pol III RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os04g54840.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species
MA_10429035g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_10429035g0030 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_949748g0010 NRPD2B DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g21160.1 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Nbi_g01478 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Ore_g18280 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.04 OrthoFinder output from all 47 species
Ore_g25703 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.07 OrthoFinder output from all 47 species
Pnu_g00855 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g02405 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Smo148107 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Solyc02g078260.3.1 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Solyc03g110880.4.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Solyc10g078860.2.1 NRPC2, Solyc10g078860 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e005007_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species
Zm00001e012400_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 467 531
IPR007120 DNA-dir_RNAP_su2_dom 710 1080
IPR007646 RNA_pol_Rpb2_4 566 628
IPR007644 RNA_pol_bsu_protrusion 33 442
IPR007642 RNA_pol_Rpb2_2 203 394
IPR007641 RNA_pol_Rpb2_7 1082 1173
IPR007647 RNA_pol_Rpb2_5 652 703
No external refs found!