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  5. Aop_g42193

Aop_g42193 (AtRABA1f, RABA1f)


Aliases : AtRABA1f, RABA1f

Description : A-class RAB GTPase & original description: none


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g42193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00103890 AtRABA6b,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00189630 AtRABA1f,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00145200 ATRABA2A,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AMTR_s00148p00100780 AtRABA5a,... Ras-related protein RABA5a OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00165p00060220 RAB-A2C,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AT1G28550 RABA1i, AtRABA1i RAB GTPase homolog A1I 0.02 OrthoFinder output from all 47 species
AT2G31680 AtRABA5d, RABA5d RAB GTPase homolog A5D 0.03 OrthoFinder output from all 47 species
AT2G33870 ArRABA1h RAB GTPase homolog A1H 0.02 OrthoFinder output from all 47 species
AT4G18430 AtRABA1e, RABA1e RAB GTPase homolog A1E 0.02 OrthoFinder output from all 47 species
Adi_g035517 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049634 ATRABA2A,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04605 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09261 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18147 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g31350 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g30591 RABA2b,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03446 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04921 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20651 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00456.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0056.g034200 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=99-740 0.05 OrthoFinder output from all 47 species
Cba_g09606 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G022800.1 AtRABA1f,... A-class RAB GTPase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.27G012200.1 ATRABA2A,... A-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.32G031600.1 ATRABA5C, ARA4,... A-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g01462 ATRABA2A,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g27746 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03700 ARA-1, ATRABA5E,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08021 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40522 ATRABA2A,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01270 RABA2b,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04229 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00471 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02093 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021253001 ATHSGBP, RABA1d,... Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os05g20050.1 RAB-A2C,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os06g35814.1 ATHSGBP, RABA1d,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os08g41340.1 AtRABA5d,... A-class RAB GTPase 0.06 OrthoFinder output from all 47 species
LOC_Os09g15790.1 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Len_g02647 RAB-A2C,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03672 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.07 OrthoFinder output from all 47 species
Len_g15896 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16053 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05986 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18286 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04684 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04098 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04633 RABA2b,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15644 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15033 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20558 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g01090 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15145 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08711 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470 ATRABA2A,... A-class RAB GTPase & original description: CDS=131-796 0.06 OrthoFinder output from all 47 species
Smo146310 AtRABA1f, RABA1f Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
Solyc10g045550.2.1 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Solyc12g014080.2.1 AtRABA1f,... A-class RAB GTPase 0.01 OrthoFinder output from all 47 species
Spa_g07580 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14805 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16289 ATRABA2A,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04947 RABA2b,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05879 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27440 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003625_P001 ATRABA5C, ARA4,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e009602_P001 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e026535_P001 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e027669_P001 ATRABA2A,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e032148_P001 ATRABA1B, RAB11,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 68 208
No external refs found!