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  5. Lfl_g13215

Lfl_g13215


Description : helicase UAP56 & original description: none


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g13215
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Aev_g13080 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32429 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Als_g52184 No alias helicase UAP56 & original description: none 0.12 OrthoFinder output from all 47 species
Aob_g12468 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.02 OrthoFinder output from all 47 species
Dcu_g19847 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035843001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
LOC_Os01g36890.2 LOC_Os01g36890 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
LOC_Os01g36920.2 LOC_Os01g36920 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Ore_g07693 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47104 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50791 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14284 No alias helicase UAP56 & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31414 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 277 384
IPR011545 DEAD/DEAH_box_helicase_dom 72 237
No external refs found!