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  5. Aop_g67887

Aop_g67887


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g67887

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
AMTR_s00130p00019530 DOT4,... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g005586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07454 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13524 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18401 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009198 No alias not classified & original description: CDS=1-3051 0.05 OrthoFinder output from all 47 species
Azfi_s0370.g067092 No alias not classified & original description: CDS=34-3717 0.04 OrthoFinder output from all 47 species
Azfi_s3130.g114639 No alias not classified & original description: CDS=34-2442 0.07 OrthoFinder output from all 47 species
Cba_g36659 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29399 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06332 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g34324 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05389 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16907 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24097 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25445 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g38510 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g43777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_25283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.03 OrthoFinder output from all 47 species
Len_g18522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10164206g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 47 species
MA_11074g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_18383g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_36655g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_525914g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_64083g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g28097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28801 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40594 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04305 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g09669 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10358 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15250 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23775 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g31920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09259 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28899 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40875 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43235 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17546 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30877 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51837 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06358 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30359 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005517 CRR22 not classified & original description: CDS=1-2004 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016059 No alias not classified & original description: CDS=25-3486 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019309 No alias not classified & original description: CDS=1-1605 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022672 No alias not classified & original description: CDS=1-3558 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025782 No alias not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g01947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04440 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17173 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25906 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39514 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18826 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g21799 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 411 438
IPR002885 Pentatricopeptide_repeat 107 129
IPR002885 Pentatricopeptide_repeat 311 333
IPR046848 E_motif 456 511
IPR002885 Pentatricopeptide_repeat 30 77
IPR002885 Pentatricopeptide_repeat 235 281
IPR002885 Pentatricopeptide_repeat 133 179
IPR002885 Pentatricopeptide_repeat 337 384
No external refs found!