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  5. Aop_g70560

Aop_g70560


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g70560
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
Aev_g21568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09904 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.05G019900.1 CRR22, Ceric.05G019900 not classified & original description: pacid=50578663... 0.04 OrthoFinder output from all 47 species
Ceric.07G059900.1 Ceric.07G059900 not classified & original description: pacid=50627027... 0.04 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.04 OrthoFinder output from all 47 species
Ceric.12G090300.1 Ceric.12G090300 not classified & original description: pacid=50600499... 0.04 OrthoFinder output from all 47 species
Ceric.16G081600.1 Ceric.16G081600 not classified & original description: pacid=50589725... 0.05 OrthoFinder output from all 47 species
Ceric.26G058400.1 VAC1, ECB2,... not classified & original description: pacid=50598871... 0.04 OrthoFinder output from all 47 species
Ceric.27G008800.1 VAC1, ECB2,... not classified & original description: pacid=50605786... 0.05 OrthoFinder output from all 47 species
Ceric.28G065700.1 CRR22, Ceric.28G065700 not classified & original description: pacid=50569957... 0.04 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017989001 LOI1, MEF11 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os01g74600.1 CRR22, LOC_Os01g74600 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g06496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10123 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g16042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38813 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Ore_g17041 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28899 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46657 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006801 EMB2261 not classified & original description: CDS=90-2282 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018986 No alias not classified & original description: CDS=1-1941 0.02 OrthoFinder output from all 47 species
Sam_g05175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g51324 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23967 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g32763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06419 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g29126 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 383 412
IPR002885 Pentatricopeptide_repeat 254 276
IPR002885 Pentatricopeptide_repeat 457 481
IPR002885 Pentatricopeptide_repeat 50 74
IPR002885 Pentatricopeptide_repeat 356 377
IPR002885 Pentatricopeptide_repeat 482 529
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 280 325
No external refs found!