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  5. Dde_g03129

Dde_g03129


Description : component *(uS10c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g03129
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AT3G13120 No alias Ribosomal protein S10p/S20e family protein 0.08 OrthoFinder output from all 47 species
Als_g12392 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g12393 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g01396 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g01016 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Azfi_s0015.g013794 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g65626 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ceric.34G039900.1 Ceric.34G039900 component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cre03.g195650 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g37977 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g02308 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Dcu_g40455 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g00382 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01014640001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_11573 No alias component psRPS10 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os03g10060.1 LOC_Os03g10060 component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Len_g05104 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Lfl_g00728 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_10432148g0010 No alias component psRPS10 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Mp7g14220.1 No alias component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Msp_g06896 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g28161 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g59109 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pnu_g14839 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ppi_g10665 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009907 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g12677 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc10g006030.3.1 Solyc10g006030 component psRPS10 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Spa_g16248 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Spa_g35752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09762 No alias component *(uS10c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e000789_P001 Zm00001e000789 component psRPS10 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Zm00001e038796_P002 Zm00001e038796 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 89 183
No external refs found!