Lfl_g16090 (ABCB19, ATABCB19,...)

Aliases : ABCB19, ATABCB19, MDR1, MDR11, ATPGP19, ATMDR1, ATMDR11, PGP19

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g16090
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
Adi_g002454	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g014378	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060981	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18719	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33230	ABCB14, ATABCB14, PGP14	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22201	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0203.g057675	ABCB19,...	subfamily ABCB transporter & original description: CDS=1-3912	0.04	OrthoFinder output from all 47 species
Azfi_s0230.g059155	No alias	not classified & original description: CDS=1-966	0.02	OrthoFinder output from all 47 species
Cba_g38324	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g03829	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g10485	ABCB14, ATABCB14, PGP14	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g21301	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g03201	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01033645001	PGP1, ABCB1, ATPGP1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
LOC_Os04g54930.1	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_138894g0010	PGP11	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
MA_6958g0010	PGP21	ABC transporter B family member 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mpzg01120.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g32847	PGP21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g09820	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26459	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g56055	PGP21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g03284	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04001	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17653	PGP1, ABCB1, ATPGP1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g093650.3.1	Solyc03g093650	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Spa_g18285	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g19381	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g44850	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016853	isomerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	101	371
IPR011527	ABC1_TM_dom	749	1020
IPR003439	ABC_transporter-like_ATP-bd	1089	1237
IPR003439	ABC_transporter-like_ATP-bd	442	590

External Links

No external refs found!

Lfl_g16090 (ABCB19, ATABCB19,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation