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  5. Dde_g04238

Dde_g04238


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g04238
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Adi_g004418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060301 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03412.t2 Aspi01Gene03412 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012027 No alias not classified & original description: CDS=1-2859 0.03 OrthoFinder output from all 47 species
Azfi_s0134.g049391 No alias not classified & original description: CDS=1-2007 0.02 OrthoFinder output from all 47 species
Cba_g06483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06940 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.02 OrthoFinder output from all 47 species
Ceric.10G047400.1 OTP84, Ceric.10G047400 not classified & original description: pacid=50612794... 0.03 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.02 OrthoFinder output from all 47 species
Ceric.28G026700.1 Ceric.28G026700 not classified & original description: pacid=50570188... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g18037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06431 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15613 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g49930.1 LOC_Os03g49930 Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.02 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
LOC_Os11g29360.1 OTP82, LOC_Os11g29360 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14977 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18960 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02854 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06601 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14701 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03167 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g09823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22395 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g40961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04708 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03104 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10481 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005530 CRR22 not classified & original description: CDS=1-2547 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025587 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026572 No alias not classified & original description: CDS=1-1578 0.03 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30277 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g33092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Tin_g23279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31798 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.02 OrthoFinder output from all 47 species
Zm00001e013713_P001 Zm00001e013713 Pentatricopeptide repeat-containing protein At4g20770... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 159 182
IPR046848 E_motif 203 246
IPR002885 Pentatricopeptide_repeat 84 132
No external refs found!