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  5. Dde_g04314

Dde_g04314


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g04314
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g09167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09708 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene08601.t1 Aspi01Gene08601 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023799 No alias not classified & original description: CDS=1-1911 0.03 OrthoFinder output from all 47 species
Azfi_s0303.g063761 No alias not classified & original description: CDS=81-2876 0.03 OrthoFinder output from all 47 species
Cba_g19555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71700 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04340 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17769 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g17772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02854 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g34619 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_138676g0010 EMB2261 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Nbi_g11031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28131 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000561 No alias not classified & original description: CDS=191-3046 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011528 EMB2758 non-specific cation channel *(PQL1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018780 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024060 No alias not classified & original description: CDS=1-2526 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025786 No alias not classified & original description: CDS=42-3869 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0243.g026662 No alias not classified & original description: CDS=264-2522 0.03 OrthoFinder output from all 47 species
Sam_g01375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16664 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Spa_g16937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06686 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006743 ubiquinone metabolic process IEP HCCA
BP GO:0006744 ubiquinone biosynthetic process IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 266 291
IPR002885 Pentatricopeptide_repeat 87 134
IPR002885 Pentatricopeptide_repeat 292 339
IPR002885 Pentatricopeptide_repeat 189 236
No external refs found!