Dde_g08812

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g08812
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00146440	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.02	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.02	OrthoFinder output from all 47 species
Ala_g22856	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g18351	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g28951	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g10329	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene08346.t1	UBQ11, Aspi01Gene08346	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15004	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g32401	UBQ6	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.76	UBQ7, RUB2	Protein degradation.peptide tagging.Related-to-Ubiquitin...	0.02	OrthoFinder output from all 47 species
Cre06.g273600	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Dac_g08496	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01023471001	UBQ10	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
LOC_Os02g06640.1	UBQ10, LOC_Os02g06640	ubiquitin-fold protein (UBQ)	0.03	OrthoFinder output from all 47 species
LOC_Os05g42424.1	UBQ4, LOC_Os05g42424	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
Lfl_g22645	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g23365	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g27408	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
MA_10435699g0030	No alias	Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_41251g0030	UBQ10	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
MA_4507637g0010	No alias	Ubiquitin-40S ribosomal protein S27a OS=Solanum...	0.02	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp7g12760.1	UBQ6	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g30561	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g02936	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pir_g08617	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_5640V3.1	UBQ6, Pp3c12_5640	ubiquitin 6	0.01	OrthoFinder output from all 47 species
Pp3c12_5760V3.1	UBQ6, Pp3c12_5760	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.02	OrthoFinder output from all 47 species
Ppi_g25580	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g26909	UBQ11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005542	UBQ6	not classified & original description: CDS=139-318	0.02	OrthoFinder output from all 47 species
Sam_g07364	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g48568	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo111605	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Spa_g08748	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g17741	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g22845	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28918	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g46338	UBQ14	UBQ ubiquiTin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034227	tRNA thio-modification	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

Dde_g08812

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation