Dde_g11326 (ATVPS54, VPS54)

Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none

Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g11326

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00168410	ATVPS54, VPS54,...	Vacuolar protein sorting-associated protein 54,...	0.03	OrthoFinder output from all 47 species
AT4G19490	ATVPS54, VPS54	VPS54	0.03	OrthoFinder output from all 47 species
Ala_g02680	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Als_g05127	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Cba_g16237	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Cba_g27943	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Ceric.15G033300.1	ATVPS54, VPS54,...	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.25	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000692.32	No alias	Vacuolar protein sorting-associated protein 54,...	0.02	OrthoFinder output from all 47 species
Gb_03763	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.04	OrthoFinder output from all 47 species
LOC_Os04g13470.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Len_g01396	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Lfl_g02410	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Msp_g23962	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.05	OrthoFinder output from all 47 species
Pnu_g06488	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Sam_g10508	No alias	GARP-specific component *(VPS54) of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Tin_g22745	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Zm00001e008702_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.04	OrthoFinder output from all 47 species
Zm00001e040599_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0034457	Mpp10 complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	882	1013

External Links

No external refs found!

Dde_g11326 (ATVPS54, VPS54)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation