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  5. Dde_g11340

Dde_g11340


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g11340

Target Alias Description ECC score Gene Family Method Actions
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015651 No alias not classified & original description: CDS=67-2907 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016134 OTP84 not classified & original description: CDS=1-2358 0.04 OrthoFinder output from all 47 species
Azfi_s0072.g037011 No alias not classified & original description: CDS=202-3270 0.03 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.04 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.03 OrthoFinder output from all 47 species
Dcu_g16808 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05665 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
MA_480955g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008098 CRR22 not classified & original description: CDS=1-2784 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023530 CRR22 not classified & original description: CDS=1-2073 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0155.g023610 No alias not classified & original description: CDS=1-2778 0.03 OrthoFinder output from all 47 species
Sam_g05175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g084830.4.1 Solyc02g084830 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g17268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 395 419
IPR002885 Pentatricopeptide_repeat 193 216
IPR002885 Pentatricopeptide_repeat 118 163
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 421 456
IPR002885 Pentatricopeptide_repeat 219 267
IPR002885 Pentatricopeptide_repeat 479 535
No external refs found!