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  5. Dde_g13562

Dde_g13562


Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g13562
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00034p00044200 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT2G39390 No alias Ribosomal L29 family protein 0.06 OrthoFinder output from all 47 species
AT3G09500 No alias Ribosomal L29 family protein 0.07 OrthoFinder output from all 47 species
AT3G55170 No alias Ribosomal L29 family protein 0.06 OrthoFinder output from all 47 species
AT5G02610 No alias Ribosomal L29 family protein 0.04 OrthoFinder output from all 47 species
Adi_g129877 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g18235 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g36147 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g24513 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g17159 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g23213 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g50897 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g74059 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.10G004300.1 Ceric.10G004300 component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.79 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Dac_g01910 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01005972001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01025050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Gb_01009 No alias component RPL35 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Gb_33813 No alias component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os02g30050.1 LOC_Os02g30050 component RPL35 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g05873 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g20319 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31826 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10429159g0020 No alias component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp3g07170.1 No alias component RPL35 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Msp_g02937 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Msp_g35334 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g03536 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c13_5200V3.1 Pp3c13_5200 Ribosomal L29 family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_2800V3.1 Pp3c3_2800 Ribosomal L29 family protein 0.05 OrthoFinder output from all 47 species
Ppi_g22603 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014105 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g23420 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g37983 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g38887 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo419858 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Smo438324 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Smo79331 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Solyc04g010240.3.1 Solyc04g010240 component RPL35 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Spa_g34294 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g27506 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e008428_P002 Zm00001e008428 component RPL35 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e014607_P001 Zm00001e014607 component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 8 63
No external refs found!