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  5. Lfl_g17320

Lfl_g17320 (AtATG18a)


Aliases : AtATG18a

Description : component *(ATG18) of autophagosome ATG9-2-18 membrane shuttling complex & original description: none


Gene families : OG0000802 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000802_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g17320

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00166590 ATG18D,... Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.02 OrthoFinder output from all 47 species
Cba_g03891 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Cba_g26260 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Dcu_g03804 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.06 OrthoFinder output from all 47 species
Dde_g01559 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
GSVIVT01010945001 AtATG18a Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.05 OrthoFinder output from all 47 species
LOC_Os01g70780.1 AtATG18a, LOC_Os01g70780 component ATG18 of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Msp_g15254 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Ore_g00632 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Pir_g04539 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Pir_g12916 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Ppi_g11987 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Spa_g16774 ATG18C, ATATG18C component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 352 382
No external refs found!