Lfl_g17565

Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g17565
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Als_g18351	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g46335	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g18454	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18513	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene23086.t1	UBQ11, Aspi01Gene23086	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43294.t1	UBQ6, Aspi01Gene43294	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene54404.t1	UBQ11, Aspi01Gene54404	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54416.t1	UBQ11, Aspi01Gene54416	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g32401	UBQ6	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.22G050200.1	UBQ6, Ceric.22G050200	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.31G024800.1	UBQ6, Ceric.31G024800	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g08496	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g04120	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Len_g14649	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g16683	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g27408	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g02121	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g02936	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g57631	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.01	OrthoFinder output from all 47 species
Ppi_g21095	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g25580	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g26909	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005542	UBQ6	not classified & original description: CDS=139-318	0.03	OrthoFinder output from all 47 species
Sam_g07364	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g08748	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003606_P001	UBQ6, Zm00001e003606	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e034164_P001	RUB1, ATRUB1,...	ubiquitin-fold protein (RUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	71
IPR002906	Ribosomal_S27a	100	121

External Links

No external refs found!

Lfl_g17565

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation