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  5. Lfl_g18046

Lfl_g18046


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g18046
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00040490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00065710 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G72200 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G72220 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G34000 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G42360 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G03550 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G19140 DNF RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G61460 BRH1 brassinosteroid-responsive RING-H2 0.02 OrthoFinder output from all 47 species
AT4G24015 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G30400 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G35480 RHA3B RING-H2 finger A3B 0.02 OrthoFinder output from all 47 species
AT4G40070 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G07040 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G41440 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g010229 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Adi_g012488 RHA3A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g057600 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g15196 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g39979 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g04740 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g10161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28153 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g57614 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aob_g03297 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g06652 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g21036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27966.t1 Aspi01Gene27966 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29934.t1 Aspi01Gene29934 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70839.t1 Aspi01Gene70839 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0091.g042816 No alias not classified & original description: CDS=1-813 0.03 OrthoFinder output from all 47 species
Azfi_s0385.g067521 RHA3B RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g21909 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Cba_g43673 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G091800.1 Ceric.01G091800 not classified & original description: pacid=50591615... 0.03 OrthoFinder output from all 47 species
Ceric.01G098400.1 Ceric.01G098400 not classified & original description: pacid=50591772... 0.03 OrthoFinder output from all 47 species
Ceric.02G105300.1 ATL8, Ceric.02G105300 not classified & original description: pacid=50585310... 0.03 OrthoFinder output from all 47 species
Ceric.09G083500.1 Ceric.09G083500 not classified & original description: pacid=50586830... 0.03 OrthoFinder output from all 47 species
Ceric.10G008300.1 Ceric.10G008300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.18G057400.1 RHA3A, Ceric.18G057400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.25G037000.1 Ceric.25G037000 not classified & original description: pacid=50594513... 0.02 OrthoFinder output from all 47 species
Ceric.34G017800.1 Ceric.34G017800 not classified & original description: pacid=50623173... 0.04 OrthoFinder output from all 47 species
Ceric.34G056700.1 Ceric.34G056700 not classified & original description: pacid=50623881... 0.03 OrthoFinder output from all 47 species
Ceric.36G050500.1 BRH1, Ceric.36G050500 not classified & original description: pacid=50569096... 0.04 OrthoFinder output from all 47 species
Ceric.38G066400.1 Ceric.38G066400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dac_g09697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11553 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g01515 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g22839 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g25304 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g02548 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g26468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000015001 ATL6 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
GSVIVT01019592001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Gb_03946 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_28973 BRH1 Probable E3 ubiquitin-protein ligase RHA1A... 0.02 OrthoFinder output from all 47 species
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g55110.1 LOC_Os01g55110 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g15060.1 LOC_Os02g15060 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os02g36330.1 LOC_Os02g36330 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g46600.1 LOC_Os02g46600 RING-H2-class E3 ligase 0.07 OrthoFinder output from all 47 species
LOC_Os02g54830.1 LOC_Os02g54830 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os03g57410.1 LOC_Os03g57410 Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g16970.1 LOC_Os04g16970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g49160.1 LOC_Os04g49160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g07140.1 LOC_Os05g07140 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
LOC_Os05g15170.1 ATL63, TL63,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os05g29710.1 LOC_Os05g29710 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os06g06150.1 LOC_Os06g06150 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08820.1 LOC_Os06g08820 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os07g48680.1 LOC_Os07g48680 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g00972 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Len_g29571 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57067 ATL4H not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g10385 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_10260361g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_1115518g0010 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_111727g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_17390g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_222729g0010 ATL2, TL2 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_2679g0010 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_391931g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_55185g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_6007471g0010 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_63503g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_6475030g0010 ATL3 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_73524g0020 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_85088g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_96368g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Msp_g16085 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Msp_g36544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07839 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g24535 ATL8 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ore_g03755 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g14691 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g27916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02997 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06078 RHA3B RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g07714 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g55293 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g59573 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pnu_g01184 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18570 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03072 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g14625 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g24030 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g46048 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001001 No alias not classified & original description: CDS=1-807 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017298 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g18767 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g37451 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc01g006910.4.1 Solyc01g006910 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc02g067700.1.1 ATL3, Solyc02g067700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g009780.1.1 Solyc04g009780 Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Solyc04g074820.3.1 Solyc04g074820 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc05g010175.1.1 RHA2A, Solyc05g010175 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc09g066300.3.1 Solyc09g066300 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g008080.3.1 Solyc10g008080 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc10g009487.1.1 Solyc10g009487 RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc11g005280.1.1 Solyc11g005280 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g007530.2.1 Solyc11g007530 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g08409 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Spa_g10665 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g17343 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Spa_g24917 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g48427 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Spa_g56586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10727 BRH1 E3 ubiquiTin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37222 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e001923_P001 ATL3, Zm00001e001923 RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e007103_P001 Zm00001e007103 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e007157_P001 Zm00001e007157 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e007956_P001 ATRING1, RING1,... RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e008560_P001 RHA2A, Zm00001e008560 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e014709_P001 Zm00001e014709 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e015495_P001 Zm00001e015495 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e023515_P001 Zm00001e023515 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e023585_P001 Zm00001e023585 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e030136_P001 Zm00001e030136 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e031442_P001 Zm00001e031442 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Zm00001e031874_P001 Zm00001e031874 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e034008_P001 Zm00001e034008 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e034025_P001 RHA3A, Zm00001e034025 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e039314_P001 Zm00001e039314 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 242 286
No external refs found!