Dde_g26730 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g26730

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00072p00171260	PUB14, ATPUB14,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
AT1G08315	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g025518	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene28347.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06960	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G010200.1	Ceric.10G010200	not classified & original description: pacid=50612946...	0.03	OrthoFinder output from all 47 species
Dac_g12068	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01006112001	PUB8, B80	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_29129	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.04	OrthoFinder output from all 47 species
LOC_Os01g60860.1	LOC_Os01g60860	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_129765g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
MA_27512g0010	PUB15	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Sam_g11228	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Solyc01g096460.2.1	Solyc01g096460	U-box domain-containing protein 4 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Solyc04g077850.3.1	Solyc04g077850	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc06g076040.3.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	467	505
IPR000225	Armadillo	426	464
IPR000225	Armadillo	384	423
IPR003613	Ubox_domain	256	325

External Links

No external refs found!

Dde_g26730 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation