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  5. Dde_g27518

Dde_g27518


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex & original description: none


Gene families : OG0000667 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g27518
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00035940 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
AT5G37720 ALY4 ALWAYS EARLY 4 0.02 OrthoFinder output from all 47 species
Adi_g011378 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Ala_g00853 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Aob_g04122 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Aop_g07392 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g009557 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Dac_g29514 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Len_g36767 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Lfl_g02048 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Pir_g05319 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Pir_g09281 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Pir_g46704 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.01 OrthoFinder output from all 47 species
Sam_g06668 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Solyc04g014460.4.1 ALY4, Solyc04g014460 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Solyc10g086400.2.1 Solyc10g086400 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.05 OrthoFinder output from all 47 species
Solyc11g073280.2.1 Solyc11g073280 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Spa_g37959 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.05 OrthoFinder output from all 47 species
Spa_g53742 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.01 OrthoFinder output from all 47 species
Zm00001e022419_P005 ALY4, Zm00001e022419 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
InterPro domains Description Start Stop
IPR025715 FoP_C 239 289
IPR000504 RRM_dom 144 212
No external refs found!