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  5. Dde_g28079

Dde_g28079


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g28079

Target Alias Description ECC score Gene Family Method Actions
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13671 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20559 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26382 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g30728 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g39787 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g39960 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64478.t1 EMB2758, Aspi01Gene64478 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024983 No alias not classified & original description: CDS=1-3423 0.04 OrthoFinder output from all 47 species
Azfi_s0405.g068373 No alias not classified & original description: CDS=1-2967 0.04 OrthoFinder output from all 47 species
Ceric.08G020400.1 OTP84, Ceric.08G020400 not classified & original description: pacid=50638334... 0.03 OrthoFinder output from all 47 species
Ceric.22G072200.1 Ceric.22G072200 not classified & original description: pacid=50614353... 0.04 OrthoFinder output from all 47 species
Ceric.23G038700.1 Ceric.23G038700 not classified & original description: pacid=50609782... 0.04 OrthoFinder output from all 47 species
Ceric.25G031300.1 Ceric.25G031300 not classified & original description: pacid=50593567... 0.03 OrthoFinder output from all 47 species
Dac_g11806 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g19063 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g26710 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35442 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g36042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04207 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g08556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08714 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g13517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g22981 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g28005 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38858 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43746 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43978 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g15843 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01032950001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_18462 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Len_g18534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g32892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04779 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g13275 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18964 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27667 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33192 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g39566 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03884 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g08620 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23074 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30593 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30635 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56161 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001817 No alias not classified & original description: CDS=1-3483 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019261 No alias not classified & original description: CDS=1-3048 0.05 OrthoFinder output from all 47 species
Solyc02g069500.1.1 Solyc02g069500 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Spa_g05643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10389 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17157 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22837 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32773 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g45637 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014800_P001 OTP82, Zm00001e014800 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 325
IPR002885 Pentatricopeptide_repeat 77 122
IPR002885 Pentatricopeptide_repeat 177 223
IPR002885 Pentatricopeptide_repeat 355 377
IPR002885 Pentatricopeptide_repeat 151 175
IPR002885 Pentatricopeptide_repeat 50 73
IPR046848 E_motif 400 455
No external refs found!