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  5. Dde_g37997

Dde_g37997


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g37997

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g018868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g31162 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07021 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07079 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g27895 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g50814 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16794 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g24180 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene01012.t1 REME1, Aspi01Gene01012 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02312.t1 Aspi01Gene02312 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16552.t1 EMB2261, Aspi01Gene16552 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16559.t1 EMB2261, Aspi01Gene16559 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69580.t1 Aspi01Gene69580 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0119.g046677 CRR2 not classified & original description: CDS=1-1557 0.05 OrthoFinder output from all 47 species
Azfi_s0134.g049413 EMB2758 not classified & original description: CDS=1-390 0.05 OrthoFinder output from all 47 species
Cba_g06595 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76621 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g15083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21425 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g05403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41204 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g07543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11766 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38771 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g03043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g64858 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15155 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g15725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g32978 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09778 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22128 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61518 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Smo92426 EMB2758 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Solyc11g071370.1.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.04 OrthoFinder output from all 47 species
Spa_g04477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17746 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g22809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23085 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e010182_P001 Zm00001e010182 Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e016542_P001 Zm00001e016542 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 457 479
IPR002885 Pentatricopeptide_repeat 254 276
IPR002885 Pentatricopeptide_repeat 587 610
IPR002885 Pentatricopeptide_repeat 759 783
IPR002885 Pentatricopeptide_repeat 79 106
IPR002885 Pentatricopeptide_repeat 153 175
IPR002885 Pentatricopeptide_repeat 356 377
IPR002885 Pentatricopeptide_repeat 279 328
IPR002885 Pentatricopeptide_repeat 381 427
IPR002885 Pentatricopeptide_repeat 684 732
IPR002885 Pentatricopeptide_repeat 179 227
IPR002885 Pentatricopeptide_repeat 483 530
No external refs found!