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  5. Lfl_g19607

Lfl_g19607 (YCF3)


Aliases : YCF3

Description : protein involved in PS-I assembly *(YCF3) & original description: none


Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19607
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
ATCG00360 YCF3 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
Aev_g34996 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.32 OrthoFinder output from all 47 species
Ala_g19904 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.04 OrthoFinder output from all 47 species
Als_g33718 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.08 OrthoFinder output from all 47 species
Cba_g70304 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.11 OrthoFinder output from all 47 species
Ceric.02G013500.1 YCF3, Ceric.02G013500 protein involved in PS-I assembly *(YCF3) & original... 0.11 OrthoFinder output from all 47 species
Ceric.09G047900.1 YCF3, Ceric.09G047900 protein involved in PS-I assembly *(YCF3) & original... 0.12 OrthoFinder output from all 47 species
Ceric.1Z022600.1 YCF3, Ceric.1Z022600 protein involved in PS-I assembly *(YCF3) & original... 0.14 OrthoFinder output from all 47 species
Ceric.1Z161500.1 YCF3, Ceric.1Z161500 not classified & original description: pacid=50596948... 0.03 OrthoFinder output from all 47 species
Ceric.26G038300.1 YCF3, Ceric.26G038300 not classified & original description: pacid=50599550... 0.17 OrthoFinder output from all 47 species
Ceric.28G030600.1 YCF3, Ceric.28G030600 not classified & original description: pacid=50569577... 0.06 OrthoFinder output from all 47 species
Ceric.29G032800.1 YCF3, Ceric.29G032800 protein involved in PS-I assembly *(YCF3) & original... 0.15 OrthoFinder output from all 47 species
Ceric.31G008800.1 Ceric.31G008800 not classified & original description: pacid=50574640... 0.08 OrthoFinder output from all 47 species
Ceric.33G023800.1 YCF3, Ceric.33G023800 protein involved in PS-I assembly *(YCF3) & original... 0.12 OrthoFinder output from all 47 species
GSVIVT01016018001 No alias Photosystem I assembly protein Ycf3 OS=Nicotiana tabacum 0.06 OrthoFinder output from all 47 species
LOC_Os01g57966.1 YCF3, LOC_Os01g57966 YCF3 protein involved in PS-I assembly 0.23 OrthoFinder output from all 47 species
LOC_Os04g16736.1 YCF3, LOC_Os04g16736 YCF3 protein involved in PS-I assembly 0.23 OrthoFinder output from all 47 species
LOC_Os04g16762.1 YCF3, LOC_Os04g16762 YCF3 protein involved in PS-I assembly 0.09 OrthoFinder output from all 47 species
LOC_Os10g21254.1 YCF3, LOC_Os10g21254 YCF3 protein involved in PS-I assembly 0.23 OrthoFinder output from all 47 species
LOC_Os10g38216.1 YCF3, LOC_Os10g38216 YCF3 protein involved in PS-I assembly 0.23 OrthoFinder output from all 47 species
Ore_g20105 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.12 OrthoFinder output from all 47 species
Pir_g08805 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.16 OrthoFinder output from all 47 species
Sam_g21679 No alias protein involved in PS-I assembly *(YCF3) & original... 0.1 OrthoFinder output from all 47 species
Solyc00g500058.1.1 YCF3, Solyc00g500058 YCF3 protein involved in PS-I assembly 0.1 OrthoFinder output from all 47 species
Solyc00g500059.1.1 Solyc00g500059 Photosystem I assembly protein Ycf3 OS=Solanum... 0.1 OrthoFinder output from all 47 species
Solyc00g500144.1.1 Solyc00g500144 Photosystem I assembly protein Ycf3 OS=Solanum... 0.1 OrthoFinder output from all 47 species
Solyc00g500210.1.1 YCF3, Solyc00g500210 YCF3 protein involved in PS-I assembly 0.1 OrthoFinder output from all 47 species
Solyc00g500211.1.1 Solyc00g500211 Photosystem I assembly protein Ycf3 OS=Solanum... 0.1 OrthoFinder output from all 47 species
Solyc09g015280.1.1 YCF3, Solyc09g015280 Photosystem I assembly protein Ycf3 OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc09g015320.3.1 PSAA, Solyc09g015320 Photosystem I P700 chlorophyll a apoprotein A1... 0.14 OrthoFinder output from all 47 species
Spa_g00949 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR001440 TPR_1 73 103
No external refs found!