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  5. Lfl_g19879

Lfl_g19879


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19879

Target Alias Description ECC score Gene Family Method Actions
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g003806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004975 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g006931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018634 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035608 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g039747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057083 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g066744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101155 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15170 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37820 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46730 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49640 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11529 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14740 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27830 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g31975 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36877 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015073 No alias not classified & original description: CDS=1-2832 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023748 CRR22 not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031470 No alias not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Azfi_s0062.g035255 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044571 No alias not classified & original description: CDS=1-2829 0.05 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.03 OrthoFinder output from all 47 species
Cba_g03349 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07181 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07466 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29935 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31308 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g75402 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G103400.1 Ceric.04G103400 not classified & original description: pacid=50630509... 0.03 OrthoFinder output from all 47 species
Ceric.10G079400.1 CRR22, Ceric.10G079400 not classified & original description: pacid=50612332... 0.05 OrthoFinder output from all 47 species
Ceric.16G016300.1 Ceric.16G016300 not classified & original description: pacid=50589149... 0.03 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.04 OrthoFinder output from all 47 species
Ceric.24G019600.1 Ceric.24G019600 not classified & original description: pacid=50629269... 0.04 OrthoFinder output from all 47 species
Ceric.27G064300.1 Ceric.27G064300 not classified & original description: pacid=50606133... 0.03 OrthoFinder output from all 47 species
Ceric.30G024700.1 Ceric.30G024700 not classified & original description: pacid=50608167... 0.03 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Ceric.39G018000.1 Ceric.39G018000 not classified & original description: pacid=50583390... 0.03 OrthoFinder output from all 47 species
Dac_g06472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g19068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g24765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33204 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24377 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.02 OrthoFinder output from all 47 species
Gb_07336 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Len_g03753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18438 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18520 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33773 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10721g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
Msp_g04377 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41108 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23526 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02784 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16586 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06960 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17174 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32073 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42323 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55034 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56081 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo5521 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 OrthoFinder output from all 47 species
Smo56766 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 OrthoFinder output from all 47 species
Smo81625 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo88824 CRR2 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.03 OrthoFinder output from all 47 species
Tin_g06087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11102 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16966 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 208
IPR002885 Pentatricopeptide_repeat 399 427
IPR002885 Pentatricopeptide_repeat 150 171
IPR002885 Pentatricopeptide_repeat 268 290
IPR002885 Pentatricopeptide_repeat 470 490
IPR002885 Pentatricopeptide_repeat 495 542
IPR002885 Pentatricopeptide_repeat 294 338
IPR002885 Pentatricopeptide_repeat 74 120
No external refs found!