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  5. Dde_g48077

Dde_g48077 (LHCB1.5, LHB1B2)


Aliases : LHCB1.5, LHB1B2

Description : component *(LHCb1/2/3) of LHC-II complex & original description: none


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g48077
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00069900 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00070890 CAB3, AB180,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AMTR_s00088p00153020 LHCB2.3, LHCB2,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AMTR_s00099p00139960 LHCB5,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AMTR_s00153p00078810 LHCB3*1, LHCB3,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 OrthoFinder output from all 47 species
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.03 OrthoFinder output from all 47 species
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.03 OrthoFinder output from all 47 species
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.03 OrthoFinder output from all 47 species
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from all 47 species
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.03 OrthoFinder output from all 47 species
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.03 OrthoFinder output from all 47 species
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.03 OrthoFinder output from all 47 species
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g023263 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aev_g32760 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g04833 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g13734 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g17843 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g41551 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16485 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene10234.t1 LHCB5, Aspi01Gene10234 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31128.t1 LHCB3*1, LHCB3,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g21669 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Cba_g70411 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G101100.1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.07G016900.1 LHCB5, Ceric.07G016900 component *(LHCb5) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G082300.1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G083100.1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G083300.1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G001900.1 LHCB3*1, LHCB3,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.17G067600.1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.32G021400.1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Cre01.g066917 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre03.g156900 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre04.g232104 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre06.g283950 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre06.g284250 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Cre06.g285250 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre10.g454734 LHCA3 Nutrient uptake.iron uptake.iron storage.PIC-type iron... 0.01 OrthoFinder output from all 47 species
Cre12.g548400 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre12.g548950 LHCB2.2, LHCB2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Cre16.g673650 LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g21074 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Dac_g29165 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Dcu_g22845 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09693 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26492 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g29296 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020858001 LHCB1.5, LHB1B2 Chlorophyll a-b binding protein 40, chloroplastic... 0.04 OrthoFinder output from all 47 species
GSVIVT01021405001 LHCB1.5, LHB1B2 Chlorophyll a-b binding protein 21, chloroplastic... 0.04 OrthoFinder output from all 47 species
GSVIVT01021406001 LHCB1.5, LHB1B2 Chlorophyll a-b binding protein 2, chloroplastic... 0.05 OrthoFinder output from all 47 species
GSVIVT01030053001 LHCB2.3, LHCB2, LHCB2.4 Chlorophyll a-b binding protein 151, chloroplastic... 0.03 OrthoFinder output from all 47 species
GSVIVT01037111001 LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Gb_05837 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Gb_30379 LHCB5 Chlorophyll a-b binding protein CP26, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41710.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g39610.1 LHCB2.2, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
LOC_Os07g37550.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os09g17740.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
LOC_Os11g13890.1 LHCB5, LOC_Os11g13890 component LHCb5 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Len_g17713 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23888 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
MA_10431300g0020 LHCB2.2, LHCB2 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
MA_131587g0010 LHCB1.4, LHB1B1 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
MA_176279g0010 LHCB5 component LHCb5 of LHC-II complex 0.04 OrthoFinder output from all 47 species
MA_267089g0010 LHCB2.1, LHCB2 Chlorophyll a-b binding protein type I, chloroplastic... 0.05 OrthoFinder output from all 47 species
Mp1g29620.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp4g10900.1 LHCB5 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g05880.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp7g05890.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from all 47 species
Mp7g06720.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g06760.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g06780.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g06790.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp7g08940.1 LHCB3*1, LHCB3 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp7g09180.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Msp_g29799 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Msp_g29800 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Msp_g43197 LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g15308 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21027 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g32299 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g35944 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41462 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Pir_g12400 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Pir_g19912 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07592 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Pnu_g10243 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c18_8100V3.1 LHCB2.3, LHCB2,... photosystem II light harvesting complex gene 2.1 0.01 OrthoFinder output from all 47 species
Ppi_g42183 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003924 LHCB5 component *(LHCb5) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018412 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0184.g024981 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Sam_g08056 No alias component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Smo444370 LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Solyc02g070940.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc02g070950.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc02g071010.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc02g071030.2.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc03g005760.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc03g005770.3.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc06g063370.3.1 LHCB5, Solyc06g063370 component LHCb5 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Solyc07g047850.3.1 LHCB2.3, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from all 47 species
Solyc07g063600.3.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Solyc08g067320.3.1 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 3A, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc08g067330.1.1 CAB3, AB180,... Chlorophyll a-b binding protein 16, chloroplastic... 0.05 OrthoFinder output from all 47 species
Solyc12g006140.2.1 LHCB2.2, LHCB2,... component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from all 47 species
Solyc12g011450.2.1 LHCB3*1, LHCB3,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Spa_g04947 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10842 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g10843 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g12575 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g12576 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g12577 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g17778 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g21350 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g22371 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g41881 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g04406 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Tin_g08938 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12536 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Tin_g32122 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Tin_g41925 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Zm00001e011045_P002 LHCB5, Zm00001e011045 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Zm00001e020624_P001 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Zm00001e034922_P001 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 65 231
No external refs found!