1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g02407

Aob_g02407 (PGP20)


Aliases : PGP20

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g02407

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00164980 ATPGP4, PGP4,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00076p00195870 PGP1, ABCB1,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.02 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.08 OrthoFinder output from all 47 species
Adi_g014378 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019429 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060981 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g34073 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene08469.t1 PGP11, Aspi01Gene08469 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17688.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20592.t1 PGP6, Aspi01Gene20592 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene43898.t1 PGP20, Aspi01Gene43898 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62048.t2 PGP2, Aspi01Gene62048 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.02 OrthoFinder output from all 47 species
Azfi_s0099.g044118 PGP20 subfamily ABCB transporter & original description: CDS=2010-6257 0.03 OrthoFinder output from all 47 species
Azfi_s0230.g059155 No alias not classified & original description: CDS=1-966 0.01 OrthoFinder output from all 47 species
Dac_g32173 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03500 PGP6 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41259 PGP11 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12010 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13730 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21294 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016617001 PGP20 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01021366001 PGP9 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_11202 PGP11 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Gb_31652 PGP6 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g74470.1 PGP20, LOC_Os01g74470 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os08g05690.1 ABCB19,... subfamily ABCB transporter 0.01 OrthoFinder output from all 47 species
Len_g04845 PGP20 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g21852 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426617g0010 PGP9 ABC transporter B family member 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_14136g0010 PGP20 subfamily ABCB transporter 0.06 OrthoFinder output from all 47 species
Mp2g02910.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp2g06270.1 PGP20 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Pir_g01067 PGP6 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646 PGP20 subfamily ABCB transporter & original description: CDS=24-3872 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0809.g027741 PGP20 subfamily ABCB transporter & original description: CDS=203-3700 0.02 OrthoFinder output from all 47 species
Sam_g25355 No alias subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Smo139408 PGP20 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Spa_g03247 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g06138 PGP6 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001258_P003 PGP20, Zm00001e001258 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Zm00001e018488_P001 PGP20, Zm00001e018488 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Zm00001e038462_P002 PGP20, Zm00001e038462 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 416 562
IPR011527 ABC1_TM_dom 837 1104
IPR011527 ABC1_TM_dom 82 347
IPR003439 ABC_transporter-like_ATP-bd 1175 1323
No external refs found!