Aliases : At-RSZ22a, RSZ22a
Description : RNA splicing factor *(RSZ21/22) & original description: none
Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aob_g03230 | |
| Cluster | HCCA: Cluster_166 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00019p00154210 | At-RSZ22a,... | RNA processing.RNA splicing.spliceosome-associated... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g020430 | At-RSZ22a, RSZ22a | RNA splicing factor *(RSZ21/22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene17745.t1 | At-RSZ22a,... | RNA splicing factor *(RSZ21/22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g20627 | At-RSZ22a, RSZ22a | RNA splicing factor *(RSZ21/22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g408200 | At-RSZ22a, RSZ22a | RNA processing.RNA splicing.spliceosome-associated... | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g06419 | RSZ21, At-RSZ21,... | RNA splicing factor *(RSZ21/22) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01020220001 | At-RSZ22a, RSZ22a | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19642 | RSZ21, At-RSZ21,... | RNA splicing factor *(RSZ21/22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18145 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g66414 | At-RSZ22a, RSZ22a | RNA splicing factor *(RSZ21/22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g32283 | No alias | RNA splicing factor *(RSZ21/22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g44647 | No alias | RNA splicing factor *(RSZ21/22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51937 | At-RSZ22a, RSZ22a | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e022939_P001 | At-RSZ22a,... | RSZ21/22 RNA splicing factor | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| CC | GO:0005685 | U1 snRNP | IEP | HCCA |
| CC | GO:0005777 | peroxisome | IEP | HCCA |
| CC | GO:0005787 | signal peptidase complex | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006465 | signal peptide processing | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0016485 | protein processing | IEP | HCCA |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | HCCA |
| MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016972 | thiol oxidase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| CC | GO:0042579 | microbody | IEP | HCCA |
| BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | HCCA |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
| CC | GO:1905368 | peptidase complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |
