1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g04399

Aob_g04399


Description : CMF transcription factor & original description: none


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04399
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.02 OrthoFinder output from all 47 species
AT1G49130 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
Adi_g062463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099497 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g100906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105671 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g05448 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34213.t1 Aspi01Gene34213 BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g034007 No alias CMF transcription factor & original description: CDS=693-2417 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037937 No alias CMF transcription factor & original description: CDS=1-2013 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.02 OrthoFinder output from all 47 species
Ceric.27G026400.1 Ceric.27G026400 CMF transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g20875 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06850 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09039 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Gb_00164 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.07 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47217 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g19039 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17788 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.07 OrthoFinder output from all 47 species
Solyc02g093590.3.1 Solyc02g093590 transcription factor (BBX-CO) 0.01 OrthoFinder output from all 47 species
Solyc03g119540.3.1 Solyc03g119540 transcription factor (BBX-CO) 0.01 OrthoFinder output from all 47 species
Solyc05g009310.3.1 Solyc05g009310 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Spa_g47101 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005433_P002 Zm00001e005433 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Zm00001e015732_P002 Zm00001e015732 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 17 59
IPR010402 CCT_domain 431 473
No external refs found!