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  5. Aob_g04406

Aob_g04406 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04406

Target Alias Description ECC score Gene Family Method Actions
Als_g14974 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g700300 CDC48B Cell division control protein 48 homolog B... 0.01 OrthoFinder output from all 47 species
Pnu_g00760 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 34 115
IPR004201 Cdc48_dom2 136 199
IPR015415 Vps4_C 728 768
IPR041569 AAA_lid_3 677 716
IPR041569 AAA_lid_3 401 443
IPR003959 ATPase_AAA_core 249 378
IPR003959 ATPase_AAA_core 522 655
No external refs found!