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  5. Aob_g04921

Aob_g04921 (AtRABA5a, RABA5a)


Aliases : AtRABA5a, RABA5a

Description : A-class RAB GTPase & original description: none


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04921
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00103890 AtRABA6b,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
AMTR_s00055p00167390 ATRABA5C, ARA4,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AMTR_s00108p00139240 AtRABA1f,... Ras-related protein RABA1f OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G16920 ATRABA1B, RAB11, RABA1b RAB GTPase homolog A1B 0.03 OrthoFinder output from all 47 species
AT1G28550 RABA1i, AtRABA1i RAB GTPase homolog A1I 0.02 OrthoFinder output from all 47 species
AT2G33870 ArRABA1h RAB GTPase homolog A1H 0.02 OrthoFinder output from all 47 species
Adi_g035517 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049633 ATRABA2A,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078038 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04605 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30591 RABA2b,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01612 RABA2b,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09683 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22467 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g42193 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0056.g034200 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=99-740 0.02 OrthoFinder output from all 47 species
Ceric.11G020600.1 RABA2b,... A-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g01462 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04229 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02057 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02093 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g47730.1 AtRABA1f,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g62950.1 RAB-A2C,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os03g62600.1 ATRABA2A,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Msp_g04684 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03300 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013006 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=103-753 0.02 OrthoFinder output from all 47 species
Sam_g17397 No alias A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g072180.3.1 ATHSGBP, RABA1d,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc09g056340.3.1 AtRABA5b,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Spa_g07579 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g48715 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13810 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009602_P001 ATRABA2A,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e032148_P001 ATRABA1B, RAB11,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!