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  5. Aob_g05250

Aob_g05250


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g05250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
AT2G34400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g018586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035312 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058825 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06657 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27648 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46737 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13433 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g22292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22600 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31182 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06887 RARE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22756 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68117 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22967.t2 Aspi01Gene22967 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000440 OTP84 not classified & original description: CDS=1-2304 0.04 OrthoFinder output from all 47 species
Cba_g04668 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20428 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g36659 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78384 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.03 OrthoFinder output from all 47 species
Ceric.04G039100.1 Ceric.04G039100 not classified & original description: pacid=50630492... 0.03 OrthoFinder output from all 47 species
Ceric.05G026100.1 Ceric.05G026100 not classified & original description: pacid=50577264... 0.03 OrthoFinder output from all 47 species
Ceric.06G003100.1 Ceric.06G003100 not classified & original description: pacid=50620504... 0.03 OrthoFinder output from all 47 species
Ceric.1Z028800.1 Ceric.1Z028800 not classified & original description: pacid=50582143... 0.03 OrthoFinder output from all 47 species
Ceric.1Z084100.1 VAC1, ECB2,... not classified & original description: pacid=50586330... 0.04 OrthoFinder output from all 47 species
Ceric.23G076700.1 OTP84, Ceric.23G076700 not classified & original description: pacid=50610256... 0.03 OrthoFinder output from all 47 species
Ceric.26G013000.1 Ceric.26G013000 not classified & original description: pacid=50600010... 0.06 OrthoFinder output from all 47 species
Ceric.29G017400.1 Ceric.29G017400 not classified & original description: pacid=50625928... 0.03 OrthoFinder output from all 47 species
Ceric.30G071500.1 Ceric.30G071500 not classified & original description: pacid=50609206... 0.03 OrthoFinder output from all 47 species
Ceric.33G052800.1 Ceric.33G052800 not classified & original description: pacid=50607149... 0.03 OrthoFinder output from all 47 species
Dac_g04271 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g07318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g16704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18772 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g19602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37997 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06075 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20585 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_32256 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g74600.1 CRR22, LOC_Os01g74600 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
LOC_Os02g58330.1 LPA66, LOC_Os02g58330 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
LOC_Os03g62400.1 LOC_Os03g62400 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
Len_g04745 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g05189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g34141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14103 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09797 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04075 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g02309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13570 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g19619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63492 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g30311 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020039 No alias not classified & original description: CDS=1-2721 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0217.g026076 CRR2 not classified & original description: CDS=1-1617 0.04 OrthoFinder output from all 47 species
Sam_g26490 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo103099 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Smo134538 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo91949 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Solyc02g094480.4.1 Solyc02g094480 RNA editing factor (MEF14) 0.03 OrthoFinder output from all 47 species
Solyc04g079410.3.1 Solyc04g079410 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Solyc07g005850.3.1 Solyc07g005850 Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Spa_g15050 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10964 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 327 354
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 634 658
IPR002885 Pentatricopeptide_repeat 535 559
IPR002885 Pentatricopeptide_repeat 196 221
IPR002885 Pentatricopeptide_repeat 299 322
IPR002885 Pentatricopeptide_repeat 435 455
IPR002885 Pentatricopeptide_repeat 460 506
IPR002885 Pentatricopeptide_repeat 562 607
IPR002885 Pentatricopeptide_repeat 359 406
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 224 271
No external refs found!