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  5. Aob_g06520

Aob_g06520


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g06520

Target Alias Description ECC score Gene Family Method Actions
AT1G14470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g055707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05294 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66061.t2 Aspi01Gene66061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012298 No alias not classified & original description: CDS=1-3033 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012490 No alias not classified & original description: CDS=1-2382 0.03 OrthoFinder output from all 47 species
Azfi_s0014.g013651 No alias not classified & original description: CDS=1-3549 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013783 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1998 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025102 No alias not classified & original description: CDS=1-3510 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.03 OrthoFinder output from all 47 species
Azfi_s0118.g046610 OTP86 not classified & original description: CDS=1-2490 0.03 OrthoFinder output from all 47 species
Azfi_s0139.g051178 No alias not classified & original description: CDS=1-2667 0.03 OrthoFinder output from all 47 species
Azfi_s0143.g051490 No alias not classified & original description: CDS=1-2688 0.03 OrthoFinder output from all 47 species
Azfi_s0197.g057350 No alias not classified & original description: CDS=1-2067 0.03 OrthoFinder output from all 47 species
Azfi_s0197.g057356 No alias not classified & original description: CDS=1-2922 0.03 OrthoFinder output from all 47 species
Azfi_s0262.g060819 REME1 not classified & original description: CDS=1-1380 0.03 OrthoFinder output from all 47 species
Azfi_s0293.g063448 No alias not classified & original description: CDS=1-2331 0.04 OrthoFinder output from all 47 species
Azfi_s0326.g065222 No alias not classified & original description: CDS=1-2895 0.03 OrthoFinder output from all 47 species
Azfi_s0373.g067166 No alias not classified & original description: CDS=1-2166 0.03 OrthoFinder output from all 47 species
Azfi_s0471.g072918 No alias not classified & original description: CDS=1-3447 0.03 OrthoFinder output from all 47 species
Cba_g34643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37478 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.04 OrthoFinder output from all 47 species
Ceric.01G058800.1 Ceric.01G058800 not classified & original description: pacid=50591781... 0.04 OrthoFinder output from all 47 species
Ceric.02G010800.1 Ceric.02G010800 not classified & original description: pacid=50584420... 0.03 OrthoFinder output from all 47 species
Ceric.06G000900.1 OTP84, Ceric.06G000900 not classified & original description: pacid=50619446... 0.04 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.12G021300.1 Ceric.12G021300 not classified & original description: pacid=50600778... 0.03 OrthoFinder output from all 47 species
Ceric.1Z003200.1 Ceric.1Z003200 not classified & original description: pacid=50628145... 0.03 OrthoFinder output from all 47 species
Ceric.22G044500.1 Ceric.22G044500 not classified & original description: pacid=50614334... 0.02 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.02 OrthoFinder output from all 47 species
Ceric.25G028400.1 Ceric.25G028400 not classified & original description: pacid=50594666... 0.03 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.03 OrthoFinder output from all 47 species
Ceric.30G037100.1 Ceric.30G037100 not classified & original description: pacid=50608918... 0.03 OrthoFinder output from all 47 species
Ceric.34G063200.1 Ceric.34G063200 not classified & original description: pacid=50623126... 0.04 OrthoFinder output from all 47 species
Dac_g43925 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07728 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38590 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17712 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
Gb_01592 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.03 OrthoFinder output from all 47 species
Len_g03900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18318 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22097 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11894 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64957 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007241 No alias protein S-acyltransferase *(PAT22) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009148 No alias not classified & original description: CDS=1352-3946 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010335 No alias not classified & original description: CDS=1-1296 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015039 No alias not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022629 No alias not classified & original description: CDS=614-2965 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025493 No alias not classified & original description: CDS=1-2751 0.02 OrthoFinder output from all 47 species
Sam_g06304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo134538 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo80365 CRR2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07560 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13206 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21929 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g43910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 143
IPR046848 E_motif 313 375
IPR002885 Pentatricopeptide_repeat 1 41
IPR002885 Pentatricopeptide_repeat 198 228
IPR002885 Pentatricopeptide_repeat 270 292
IPR002885 Pentatricopeptide_repeat 170 191
IPR002885 Pentatricopeptide_repeat 67 91
IPR002885 Pentatricopeptide_repeat 233 259
No external refs found!