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  5. Lfl_g21733

Lfl_g21733 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g21733
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AT1G20696 NFD03, HMGB3, NFD3 high mobility group B3 0.04 OrthoFinder output from all 47 species
AT3G51880 NFD1, HMGB1 high mobility group B1 0.01 OrthoFinder output from all 47 species
Ala_g00465 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17347 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g00483 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Als_g06156 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Als_g36476 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Als_g44161 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene12485.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene15766.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene22053.t1 HMGB6, Aspi01Gene22053 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene22135.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene33539.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene47520.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene48018.t1 NFD4, HMGB4,... DNA bending architectural protein *(HMG-B) & original... 0.11 OrthoFinder output from all 47 species
Aspi01Gene57132.t1 Aspi01Gene57132 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g54903 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G004800.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g21071 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Gb_23297 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Lfl_g24387 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g05652 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g34037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g37442 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01738 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g20909 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.33 OrthoFinder output from all 47 species
Pir_g33393 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Ppi_g04305 NFD1, HMGB1 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012915 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015212 NFD2, HMG BETA... not classified & original description: CDS=206-571 0.01 OrthoFinder output from all 47 species
Sam_g13942 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g50491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g33504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010305_P004 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 51 120
No external refs found!