Lfl_g21752 (SGR4, ZIG1, VTI1A,...)

Aliases : SGR4, ZIG1, VTI1A, ATVTI11, VTI11, ZIG, ATVTI1A

Description : Qb-type VTI-group component of SNARE membrane fusion complex & original description: none

Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g21752

Target	Alias	Description	ECC score	Gene Family Method
AT1G26670	VTI12, VTI1B, ATVTI12	Vesicle transport v-SNARE family protein	0.02	OrthoFinder output from all 47 species
AT5G39510	SGR4, ZIG1,...	Vesicle transport v-SNARE family protein	0.03	OrthoFinder output from all 47 species
Adi_g008513	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Aev_g00705	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Aob_g30123	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Cba_g08457	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Cba_g13140	ATVTI13, VTI13	Qb-type VTI-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Cre13.g577500	VTI12, VTI1B, ATVTI12	Vesicle trafficking.SNARE target membrane recognition...	0.03	OrthoFinder output from all 47 species
GSVIVT01012494001	VTI12, VTI1B, ATVTI12	Vesicle trafficking.SNARE target membrane recognition...	0.03	OrthoFinder output from all 47 species
Pp3c17_17260V3.1	SGR4, ZIG1,...	Vesicle transport v-SNARE family protein	0.01	OrthoFinder output from all 47 species
Tin_g43976	SGR4, ZIG1,...	Qb-type VTI-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007705	Vesicle_trsprt_v-SNARE_N	12	90

External Links

No external refs found!