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  5. Aob_g07409

Aob_g07409


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g07409

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.04 OrthoFinder output from all 47 species
Adi_g056630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g23881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21679 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36933 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40241 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene26812.t1 Aspi01Gene26812 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34222.t1 Aspi01Gene34222 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene55895.t1 Aspi01Gene55895 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69580.t1 Aspi01Gene69580 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0179.g056242 No alias not classified & original description: CDS=1-2559 0.06 OrthoFinder output from all 47 species
Azfi_s0236.g059498 No alias not classified & original description: CDS=1-2331 0.05 OrthoFinder output from all 47 species
Cba_g45673 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.13G062400.1 Ceric.13G062400 not classified & original description: pacid=50636814... 0.05 OrthoFinder output from all 47 species
Ceric.16G011900.1 EMB2758, Ceric.16G011900 not classified & original description: pacid=50589297... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.04 OrthoFinder output from all 47 species
Dac_g04642 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g37938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07839 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04001 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24358 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12832 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
LOC_Os01g58630.1 LOC_Os01g58630 Pentatricopeptide repeat-containing protein At5g15300... 0.03 OrthoFinder output from all 47 species
LOC_Os05g24890.1 LOC_Os05g24890 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
LOC_Os06g02200.1 CRR22, LOC_Os06g02200 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g10356 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Ore_g01771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03012 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g56915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04226 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30301 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06986 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11120 REME1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g16487 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32279 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006451 No alias not classified & original description: CDS=1-639 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g010984 No alias not classified & original description: CDS=1-2295 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015486 No alias not classified & original description: CDS=1-1653 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0232.g026457 No alias not classified & original description: CDS=1-363 0.04 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo11063 REME1 Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g06334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14323 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15000 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15123 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18446 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19054 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g57153 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46234 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR046849 Eplus_motif 935 958
IPR002885 Pentatricopeptide_repeat 825 847
IPR002885 Pentatricopeptide_repeat 789 815
IPR002885 Pentatricopeptide_repeat 523 548
IPR002885 Pentatricopeptide_repeat 622 646
IPR002885 Pentatricopeptide_repeat 725 752
IPR002885 Pentatricopeptide_repeat 219 241
IPR002885 Pentatricopeptide_repeat 147 176
IPR002885 Pentatricopeptide_repeat 246 293
IPR002885 Pentatricopeptide_repeat 347 394
IPR002885 Pentatricopeptide_repeat 549 596
IPR002885 Pentatricopeptide_repeat 649 696
IPR002885 Pentatricopeptide_repeat 448 495
IPR032867 DYW_dom 966 1057
No external refs found!