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  5. Aob_g09042

Aob_g09042


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g09042
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g016094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035608 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g035618 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21218 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37868 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05931 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15360 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03152.t1 Aspi01Gene03152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24003.t1 OTP84, Aspi01Gene24003 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13545 EMB2758 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g20828 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G097800.1 Ceric.04G097800 not classified & original description: pacid=50631082... 0.02 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.04 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.04 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.05 OrthoFinder output from all 47 species
Ceric.18G077100.1 Ceric.18G077100 not classified & original description: pacid=50621411... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Dcu_g08714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21341 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40968 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43120 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g24640.1 REME1, LOC_Os09g24640 Pentatricopeptide repeat-containing protein At2g36730... 0.04 OrthoFinder output from all 47 species
Len_g05423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12108 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18014 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g38569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37815 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20192 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14311 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15475 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g21699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005639 No alias CDP-diacylglycerol phosphatidylserine synthase &... 0.02 OrthoFinder output from all 47 species
Smo92426 EMB2758 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.03 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 274 297
IPR002885 Pentatricopeptide_repeat 473 499
IPR046848 E_motif 515 564
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 298 345
IPR002885 Pentatricopeptide_repeat 196 244
IPR002885 Pentatricopeptide_repeat 96 144
No external refs found!