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  5. Aob_g10991

Aob_g10991


Description : component *(ADA3) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g10991
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00222230 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g025103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29931 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g21244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29245 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Als_g49585 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aop_g21813 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aspi01Gene24818.t1 Aspi01Gene24818 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32698.t1 Aspi01Gene32698 component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015784 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s2452.g111479 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.03G067900.1 Ceric.03G067900 component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ceric.34G015100.1 Ceric.34G015100 component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Dcu_g46147 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Dde_g02394 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ehy_g31344 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
GSVIVT01001003001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g73620.1 LOC_Os01g73620 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
LOC_Os05g01690.1 LOC_Os05g01690 component ADA3 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Len_g10698 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Len_g35259 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Lfl_g10282 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Lfl_g27993 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Msp_g14668 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Nbi_g18247 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ore_g18819 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Pir_g13632 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Pir_g43188 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011817 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sam_g48948 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Solyc07g040980.3.1 Solyc07g040980 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Solyc11g006960.2.1 Solyc11g006960 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Spa_g26204 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e018678_P002 Zm00001e018678 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Zm00001e027665_P001 Zm00001e027665 component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Zm00001e029688_P001 Zm00001e029688 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 996 1082
No external refs found!